The Picard command-line tools are provided as a single executable jar file. The Picard toolkit is open-source under the MIT license and free for all uses. For developers, the source code, building instructions and implementation/development resources are available on GitHub. Note that the information on this page is targeted at end-users. See especially the SAM specification and the VCF specification.
These file formats are defined in the Hts-specs repository. Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. View the Project on GitHub broadinstitute/picard A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
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